[phenixbb] sculptor

[Bryan Lepore]

On Thu, Nov 18, 2010 at 5:47 PM, Nathaniel Echols <nechols at lbl.gov> wrote:
> On Thu, Nov 18, 2010 at 2:31 PM, Bryan Lepore <bryanlepore at gmail.com> wrote:
> I think it is expecting exactly the
> same output as CLUSTALW, which has a slightly different first >line than
> MAFFT.

bingo

> We now distribute a multiple sequence alignment program >called
> MUSCLE with Phenix - you can use it like this:

yes thanks - i saw that in there ;^)

>Sculptor should also take alignments in FASTA
> or PIR format.  (Make sure you use the correct file extension,

HERE we go - .fasta is running. but clustalw extension is .aln, right?

oh also : wouldn't this be a good candidate for multi-processor threading?

-Bryan