[phenixbb] R-free problem with phenix.refine
Pavel Afonine
pafonine at lbl.gov
Fri Oct 22 08:53:05 PDT 2010
Hi Shya,
> I have a related question, when you run phenix.model_vs_data you get
> recomputed R and R free values, what does this mean? I ran my data and got
> the following:
> Model_vs_Data:
> r_work(re-computed) : 0.1823
> r_free(re-computed) : 0.2076
> bulk_solvent_(k_sol,b_sol) : 0.36 44.79
> overall_anisotropic_scale_(b_cart) : 21.60 -11.34 -9.52 -0.00 -0.00 -0.00
> solvent_content_estimated_via_mask : 41.5 %
these are the value computed using your all input data (no resolution or
sigma cutoffs) and input model. The other values are those extracted
from PDB file header, and those computed using resolution and sigma
cutoffs (if any were used).
Pavel.
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