[phenixbb] why are my B factors being "refined"
Scott Classen
sclassen at lbl.gov
Mon Apr 4 12:35:47 PDT 2011
Hello Phenix community,
I'm currently using nightly build 718, but this behavior is exhibited since sometime in the 1.6.xx releases too.
I've turned off ADP refinement (only doing rigid_body refinement) and set the b_iso specifically as such:
modify_start_model {
selection = None
adp {
atom_selection = None
randomize = None
set_b_iso = 55
convert_to_isotropic = None
convert_to_anisotropic = None
shift_b_iso = None
scale_adp = None
}
Yet the output PDB file has all b-factors in the 100s.
Whazzup with that?
Thanks,
Scott
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Scott Classen, Ph.D.
SIBYLS Beamline 12.3.1
sibyls.als.lbl.gov
Advanced Light Source
Lawrence Berkeley National Laboratory
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Berkeley, CA 94720
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