[phenixbb] Installation issue

Simon Kolstoe s.kolstoe at ucl.ac.uk
Thu Apr 21 11:16:24 PDT 2011

Thanks Nat,

Seems I thought it was installed in /Applications when in fact it was in /usr/local


Dr Simon Kolstoe
Laboratory for Protein Crystallography
Centre for Amyloidosis & Acute Phase Proteins
UCL Medical School
Rowland Hill Street, London NW3 2PF

Tel:  020 7433 2765

On 21 Apr 2011, at 19:06, Nathaniel Echols wrote:

> On Thu, Apr 21, 2011 at 10:58 AM, Simon Kolstoe <s.kolstoe at ucl.ac.uk> wrote:
>> I've just installed the latest stable version of phenix on a new macbook pro using phenix-installer-1.7-650-mac-intel-osx.tar
>> However, as I like running phenix.refine on the command line, I normally source the script phenix_env.sh which on my other computer is in the directory /Applications/PHENIX-1.7-650/Contents/phenix-1.7-650/
>> However the latest install doesn't seem to have the final phenix-1.7-650 directory! Has phenix_env.sh moved somewhere else and if so where?
> There are three different Mac installer types currently in use:
> - command-line installer (.tar)
> - disk image (version 1.7 only - I'm not making any more of these)
> - graphical installer (recent nightly builds, depending on platform
> and whether I remembered to create the package)
> The command-line installer will always default to
> /usr/local/phenix-<version>.  If run from a graphical login, it will
> also generate /Applications/PHENIX-<version> with an icon launcher,
> but no other files.  The graphical installers install the entire
> distribution in /Applications, with most of it hidden in the
> "Contents" directory.
> So if you're using the command-line version, you should do this:
>  source /usr/local/phenix-<version>/phenix_env.sh
> and for the graphical installer:
>  source /Applications/PHENIX-<version>/Contents/phenix-<version>/phenix_env.sh
> -Nat
> _______________________________________________
> phenixbb mailing list
> phenixbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/phenixbb

More information about the phenixbb mailing list