[phenixbb] autobuild mtz file

Thomas C. Terwilliger terwilliger at lanl.gov
Mon Aug 8 09:53:40 PDT 2011


Hi Intekhab,

The file that Pavel is referring to can be found as:

  AutoBuild_run_1_/overall_best_refine_map_coeffs.mtz

All the best,
Tom T

>> Hi Intekhab,
>>
>> Autobuild uses phenix.refine internally, and phenix.refine creates the
>> Fourier map coefficients you want 2mFo-DFc and mFo-DFc (which is not the
>> same as 2fo-fc and fo-fc). So load that MTZ file into Coot that contains
>> labels:
>>
>> 2FOFCWT
>> PH2FOFCWT
>> 2FOFCWT_no_fill
>> PH2FOFCWT_no_fill
>> FOFCWT
>> PHFOFCWT
>>
>> Pavel.
>>
>> On 8/7/11 10:19 PM, intekhab alam wrote:
>>> Hi there
>>>
>>> i run autobuild in phenix and have my model and mtz file.
>>> when i open my mtz file in coot using the option open mtz, a window
>>> pops " column label assignment"
>>> How can i convert this mtz file that can open in coot which has both
>>> 2fo-fc as well as fo-fc maps.
>>>
>>> --
>>> INTEKHAB ALAM
>>> LABORATORY OF STRUCTURAL BIOINFORMATICS
>>> KOREA UNIVERSITY, SEOUL
>>>
>>>
>>> _______________________________________________
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org
>>> http://phenix-online.org/mailman/listinfo/phenixbb
>>
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb
>>



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