[phenixbb] rosetta fragment files -- corrected command

Thomas C. Terwilliger terwilliger at lanl.gov
Thu Aug 11 07:32:08 PDT 2011

Hi again David,

Sorry, corrected command below.

Can you try the version of the script I put in phenix:

    phenix.adjust_robetta_resid  fragments_in fragments_adjusted

Let me know if that doesn't do it!
All the best,
Tom T

>> Hi,
>> I'm also trying to use rosetta with a protein that has more than 650
aminoacids. I have found the answer on last June to the similar
question about the fragment files but I couldn't make the script to
change the aminoacids numbers work so far
>> http://www.phenix-online.org/pipermail/phenixbb/2011-June/017268.html
>> However I think the script got out of format and I can't make it work.
I have python installed however I'm a total beginner on python.
>> Is it possible that I could have the scrip file so I don't lose the
proper format?
>> Also, should I replace something inside (like put the file name
somewhere) so it works?
>> Thanks in advance
>> David Neves
>> Institut de Biologie Structurale
>> Grenoble France

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