[phenixbb] nucleic acid secondary restraints breaking in 1.7.1-743

Nathaniel Echols nechols at lbl.gov
Mon Aug 15 07:19:04 PDT 2011

On Mon, Aug 15, 2011 at 6:04 AM, Francis E Reyes
<Francis.Reyes at colorado.edu> wrote:
> Got past that part but now a new error
> Traceback (most recent call last):
>  File "/usr/local/phenix-dev-842/phenix/phenix/command_line/refine.py", line 11, in <module>
>    command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>  File "/usr/local/phenix-dev-842/phenix/phenix/refinement/command_line.py", line 96, in run
>    call_back_handler=call_back_handler)
>  File "/usr/local/phenix-dev-842/phenix/phenix/refinement/driver.py", line 1376, in run
>    ncs_manager             = self.ncs_manager)
>  File "/usr/local/phenix-dev-842/phenix/phenix/refinement/strategies.py", line 489, in refinement_machine
>    fmodels.fmodel_xray().update_f_part(
> AttributeError: 'manager' object has no attribute 'update_f_part'
> Immediately after bulk solvent modeling and scaling.

The option "use_statistical_model_for_missing_atoms" is disabled until
further notice - unfortunately, the current code does not actually
warn you before it crashes.  I'll fix that now.


More information about the phenixbb mailing list