[phenixbb] Definition of "Saenger Class"

[Nathaniel Echols]

On Fri, Aug 19, 2011 at 9:04 AM, jens j birktoft <jens.knold at gmail.com>wrote:

> Could somebody direct me to "saenger class" definitions used in base-pair
> restraints for DNA/RNA.
>

http://bps.rutgers.edu/search/saenger_search

As of a few months ago, it is no longer necessary to explicitly specify this
in the input parameters - if left undefined, the appropriate class for each
base pair will be automatically determined based on the current atomic
distances.  There may be ambiguity in a few cases where the starting model
is poor, but it seems to work well most of the time.

-Nat
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20110819/ee7b9da4/attachment.htm>