[phenixbb] Definition of "Saenger Class"

Nathaniel Echols nechols at lbl.gov
Fri Aug 19 10:27:11 PDT 2011

On Fri, Aug 19, 2011 at 9:04 AM, jens j birktoft <jens.knold at gmail.com>wrote:

> Could somebody direct me to "saenger class" definitions used in base-pair
> restraints for DNA/RNA.


As of a few months ago, it is no longer necessary to explicitly specify this
in the input parameters - if left undefined, the appropriate class for each
base pair will be automatically determined based on the current atomic
distances.  There may be ambiguity in a few cases where the starting model
is poor, but it seems to work well most of the time.

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