[phenixbb] Compilation problem rosetta MR on Fedora 10

[Francois Berenger]

Maybe you need to install the packages zlib and zlib-devel
for your Linux distribution so that you can link program to them.

On 12/15/2011 10:08 PM, Martin Moche wrote:
> Dear Phenix Users,
>
> I am trying to compile rosetta mr on my fedora 10 computer:
> http://www.phenix-online.org/documentation/mr_rosetta.htm#anch35
>
> Compared to the instructions
> % tar xzf rosetta3.2_Bundles.tgz
>
> did not work for me, instead I run
> % tar xvf rosetta3.2_Bundles.tgz
>
> and subsequently
> % tar xvf BioTools-3.3.tgz
> % tar xvf protocol_capture-3.3.tgz
> etc etc
>
>  From the rosetta_source directory as an ordinary user (not root) I run:
> % python scons.py -j2 bin mode=release
>
> The compilation runs for a while but finally I got the termination
> message below.
>
> What should I try next?
>
> Best regards,
> Martin
>
> #################### my computer info ##################
>
> daffy-mochma 183% scons --version
> SCons by Steven Knight et al.:
> script: v1.0.0.d20080826.r3315, 2008/08/26 11:30:08, by scons on scons-dev
> engine: v1.0.0.d20080826.r3315, 2008/08/26 11:30:08, by scons on scons-dev
> Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 The SCons
> Foundation
>
> daffy-mochma 104% uname -a
> Linux daffy 2.6.27.41-170.2.117.fc10.i686 #1 SMP Thu Dec 10 11:00:29 EST
> 2009 i686 i686 i386 GNU/Linux
>
> daffy-mochma 105% python --version
> Python 2.5.2
>
>
>
> ############# termination message #############################
>
> g++ -o build/src/release/linux/2.6/32/x86/gcc/libutility.so
> -Wl,-rpath=/net/fileserver/xtal/rosetta3.3_bundles/rosetta_source/build/external/release/linux/2.6/32/x86/gcc/
> -shared
> build/src/release/linux/2.6/32/x86/gcc/utility/pointer/ReferenceCount.os
> build/src/release/linux/2.6/32/x86/gcc/utility/pointer/ReferenceCountMI_.os
> build/src/release/linux/2.6/32/x86/gcc/utility/options/OptionCollection.os
> build/src/release/linux/2.6/32/x86/gcc/utility/options/mpi_stderr.os
> build/src/release/linux/2.6/32/x86/gcc/utility/tag/Tag.os
> build/src/release/linux/2.6/32/x86/gcc/utility/sql_database/DatabaseSessionManager.os
> build/src/release/linux/2.6/32/x86/gcc/utility/boinc/boinc_util.os
> build/src/release/linux/2.6/32/x86/gcc/utility/io/icstream.os
> build/src/release/linux/2.6/32/x86/gcc/utility/io/izstream.os
> build/src/release/linux/2.6/32/x86/gcc/utility/io/ocstream.os
> build/src/release/linux/2.6/32/x86/gcc/utility/io/ozstream.os
> build/src/release/linux/2.6/32/x86/gcc/utility/options/keys/OptionKeys.os build/src/release/linux/2.6/32/x86/gcc/utility/excn/Exceptions.os
> build/src/release/linux/2.6/32/x86/gcc/utility/file/file_sys_util.os
> build/src/release/linux/2.6/32/x86/gcc/utility/file/FileName.os
> build/src/release/linux/2.6/32/x86/gcc/utility/file/gzip_util.os
> build/src/release/linux/2.6/32/x86/gcc/utility/file/PathName.os
> build/src/release/linux/2.6/32/x86/gcc/utility/basic_sys_util.os
> build/src/release/linux/2.6/32/x86/gcc/utility/string_util.os
> build/src/release/linux/2.6/32/x86/gcc/utility/heap.os
> build/src/release/linux/2.6/32/x86/gcc/utility/integer_mapping.os
> build/src/release/linux/2.6/32/x86/gcc/utility/mpi_util.os
> build/src/release/linux/2.6/32/x86/gcc/utility/exit.os
> build/src/release/linux/2.6/32/x86/gcc/utility/LexicographicalIterator.os -Llib
> -Lexternal/lib -Lbuild/src/release/linux/2.6/32/x86/gcc -Lsrc
> -Lbuild/external/release/linux/2.6/32/x86/gcc -Lexternal
> -L/usr/local/lib -L/usr/lib -lObjexxFCL -lz -lcppdb -lsqlite3
> /usr/bin/ld: cannot find -lz
> collect2: ld returned 1 exit status
> scons: *** [build/src/release/linux/2.6/32/x86/gcc/libutility.so] Error 1
> scons: building terminated because of errors.
>
>
> Martin Moche, Ph.D.
> Head of Protein Crystallography
> Karolinska Institutet
> MBB/PSF
> Scheeles väg 2
> 171 77 Stockholm
> Sweden
> phone: +46-8-524 868 43
> mobile: +46-73-322 93 27
> fax: +46-8-524 868 68
> email: Martin.Moche at ki.se
>
>
>
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