[phenixbb] Phenix version 1.7-650 and Pymol

Leonid Flaks flaks at bnl.gov
Wed Feb 2 09:09:20 PST 2011

>On Tue, Feb 1, 2011 at 5:49 AM, Leonid Flaks<flaks at bnl.gov  <http://phenix-online.org/mailman/listinfo/phenixbb>>  wrote:
>>/  Nat, As I reported minutes ago coot issue is solved. Now I clicked on pymol
/>>/  button - got an error:
/>/>  /usr/local/crys/64/phenix-1.7-650/pymol/pymol.exe: error while loading
/>/>  shared libraries: libXmu.so.6: cannot open shared object file: No such file
/>>/  or directory
>That's a system library, and not something we distribute or otherwise
>interfere with.  Does PyMOL even work on the command line?

Nat, pymol is installed as rpm binary and works fine from command line. 
The library in question is also installed from rpm:

dunkin:/home/pxuser 104: rpm  -qf /usr/lib64/libXmu.so.6

dunkin:/home/pxuser 105: rpm -q pymol

Could it be something like LD_LIBRARY_PATH or similar?

To tell the truth my users are happy to have coot working but don't care 
too much about the pymol at the moment, so I would not put very high 
priority on this problem.

By the way, I never received you reply - had to cut-and-paste from the 
web interface. I am subscribed to digest, which has not showed up yet.



Leonid Flaks

Phone: (631) 344-2682
Fax  : (631) 344-2741

More information about the phenixbb mailing list