[phenixbb] how to cut off side chain from a model

[Ed Pozharski]

---
pdbset xyzin foo.pdb xyzout foofoo.pdb << eof
PICK N O CA C CB
eof
---

should do it


On Fri, 2011-02-11 at 18:03 -0500, crystallogrphy wrote:
> Hi, 
> I am refining a low resolution data (4.7A). I want to cut off all side
> chains from my model because they cannot be seen from the density.
> Phenix pdbtools can only keep the backbone, but cannot keep the Cbeta
> atom. What program I can use to cut off all the side chain, but keep
> the Cbeta atoms?
> 
> Thanks!
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> phenixbb at phenix-online.org
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-- 
Edwin Pozharski, PhD, Assistant Professor
University of Maryland, Baltimore
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