[phenixbb] how to cut off side chain from a model

Ed Pozharski epozh001 at umaryland.edu
Mon Feb 14 07:48:37 PST 2011

Note that original request was sent to both phenix and ccp4 bulletin
boards.  And I think most reasonable people have agreed in the past that
advertising phenix on ccp4bb is OK (at the least on the freedom of
speech grounds :)  So I guess the reverse must also be true



On Mon, 2011-02-14 at 13:02 +0100, Christian Roth wrote:
> I dont wanna advertise too much non phenix programs, but in principle
> chainsaw(CCP4 supported) should do what you want and trim your model to C-
> beta.
> Regards Christian
> Am Samstag 12 Februar 2011 00:03:32 schrieb crystallogrphy:
> > Hi,
> > I am refining a low resolution data (4.7A). I want to cut off all side
> > chains from my model because they cannot be seen from the density. Phenix
> > pdbtools can only keep the backbone, but cannot keep the Cbeta atom. What
> > program I can use to cut off all the side chain, but keep the Cbeta atoms?
> > 
> > Thanks!
> > 
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                               Julian, King of Lemurs

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