[phenixbb] AutoMR error

Randy Read rjr27 at cam.ac.uk
Fri Feb 18 01:11:30 PST 2011


Could you send the log file (not necessarily to the list)?  The interesting one would be


This might give a hint about where you're running out of memory.  Phaser has gradually been getting better in its memory usage, so I'm surprised that something that worked before isn't working now.


Randy Read

On 18 Feb 2011, at 01:00, Erik R. Kish-Trier wrote:

> Hi,
> I am getting the following error from AutoMR, which I am fairly certain is due to the deficiencies of my machine:
> Python(2624) malloc: *** mmap(size=1665024000) failed (error code=12)
> *** error: can't allocate region
> *** set a breakpoint in malloc_error_break to debug
> While using the prior release of phenix, I was able to get a similar job to complete, which makes me curious.
> I am running phenix 1.7-650 (GUI) on an Intel Mac with 4GB of RAM and OS 10.6.6.
> Any suggestions?
> Thanks!
> Erik

Randy J. Read
Department of Haematology, University of Cambridge
Cambridge Institute for Medical Research      Tel: + 44 1223 336500
Wellcome Trust/MRC Building                   Fax: + 44 1223 336827
Hills Road                                    E-mail: rjr27 at cam.ac.uk
Cambridge CB2 0XY, U.K.                       www-structmed.cimr.cam.ac.uk

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