[phenixbb] ReadySet

Nigel Moriarty nwmoriarty at lbl.gov
Fri Feb 18 15:15:46 PST 2011


Can you tell me the command you used and send the inputs to me off-line?


On Fri, Feb 18, 2011 at 2:46 PM, riya doreen <driya28 at gmail.com> wrote:
> Hi Everyone,
> I am having trouble refining a structure that has
> 2*-deoxy-thymidine-5*-triphosphate (three letter id is TTP). My PDB file has
> exactly the same number and names for the atoms as described in the cif file
> (TTP.cif). ReadySet recognizes TTP but crashes with a warning that it could
> match only 21 out of a total of 29 atoms.
> What am I missing here ? I can overcome the problem by renaming TTP to some
> random name and generating a new cif file with phenix.elbow but why can't I
> use the standard TTP.cif file ?
> Thanks
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Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov

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