[phenixbb] bugs in dev 625

[Ralf W. Grosse-Kunstleve]

Hi Oliver,
This bug is now fixed. The fix will appear in build 630
tonight.
If you want to patch your current installation, edit the
file $PHENIX/cctbx_project/mmtbx/twinning/twin_f_model.py
and insert the line

import libtbx.path

at the top.

Ralf


>
>From: Tom Terwilliger <terwilliger at lanl.gov>
>To: PHENIX user mailing list <phenixbb at phenix-online.org>
>Sent: Tue, January 4, 2011 10:46:13 AM
>Subject: Re: [phenixbb] bugs in dev 625
>
>Dear Oliver,
>
>
>Thank you for the bug report, and I'm sorry for the problem!
>
>
>I'm not quite sure what occurred here.  Our automatic tests for dev 625 all 
>passed fine (except some minor printout changes in phenix.mr_rosetta) and these 
>include a full set of tests on phenix.autobuild.
>
>
>I am guessing that perhaps: (1) there was something unusual in this run, maybe 
>something in your pdb file, (2) this triggered an unusual path in 
>phenix.autobuild, and (3) in this unusual path there is an error where libtbx is 
>not defined, leading to your output.
>
>
>Might it be possible to send me the inputs that you used and the exact command 
>you ran phenix.autobuild with (directly at terwilliger at lanl.gov, not to the 
>list)?  If so, I can run it and figure out what is going wrong, and hopefully 
>fix it right away.
>
>
>Thanks very much!
>-Tom T
>
>
>On Jan 4, 2011, at 6:08 AM, Weiergräber, Oliver H. wrote:
>
>Hello,
>>
>>trying to use phenix.autobuild (command line version, didn't try the gui) in dev 
>>625, I encountered the following error:
>>
>>############################################
>>Build cycle 1 of 6   method:rebuild
>>Initial rebuild cycle: just combining previous models or copying
>>over initial PDB file
>>
>>Using edited_pdb.pdb for rebuild, copied to unrefined.pdb_1
>>Refining model:  unrefined.pdb_1
>>No refinement carried out (may need free R flags)
>>Error message from phenix.refine:  global name 'libtbx' is not defined
>>Refinement failed...
>>############################################
>>
>>If invoked directly, phenix.refine seems to run fine, so there may be a problem 
>>with scripting in the autobuild wizard.
>>
>>Regards,
>>Oliver
>>
>>
>>================================================
>>PD Dr. Oliver H. Weiergräber
>>Institut für Strukturbiologie und Biophysik
>>ISB-3: Strukturbiochemie
>>Tel.: +49 2461 61-2028
>>Fax: +49 2461 61-1448
>>================================================
>>
>>------------------------------------------------------------------------------------------------
>>
>>------------------------------------------------------------------------------------------------
>>
>>Forschungszentrum Juelich GmbH
>>52425 Juelich
>>Sitz der Gesellschaft: Juelich
>>Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
>>Vorsitzender des Aufsichtsrats: MinDirig Dr. Karl Eugen Huthmacher
>>Geschaeftsfuehrung: Prof. Dr. Achim Bachem (Vorsitzender),
>>Dr. Ulrich Krafft (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
>>Prof. Dr. Sebastian M. Schmidt
>>------------------------------------------------------------------------------------------------
>>
>>------------------------------------------------------------------------------------------------
>>
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>>
>
>
>Thomas C. Terwilliger
>Mail Stop M888
>Los Alamos National Laboratory
>Los Alamos, NM 87545
>
>Tel:  505-667-0072                 email: terwilliger at LANL.gov
>Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
>PHENIX web site: http:www.phenix-online.org
>ISFI Integrated Center for Structure and Function Innovation 
>web site: http://techcenter.mbi.ucla.edu
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>
>
>
>
>
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