[phenixbb] Displaying electron density in PyMol

Pavel Afonine pafonine at lbl.gov
Sun Jan 9 21:55:44 PST 2011


I searched and didn't find any test for phenix.list, so no surprises it 
was broken or will be broken sooner or later.

Yes, it's very useful tool - I didn't realist we have it. I have two 
minor suggestions:

- since most of tool names are pretty cryptic, it would be very helpful 
to have a short line explaining the tool. For example:

phenix.refine - crystallographic structure refinement
phenix.maps - compute maps
phenix.fmodel - compute structure factors

- may be we need filer out some of them and leave only those that the 
end-users may be interested in. For example, I have no idea what those are:
and so on.


On 1/7/11 3:33 PM, Nathaniel Echols wrote:
> On Fri, Jan 7, 2011 at 2:45 PM, Bryan Lepore<bryanlepore at gmail.com>  wrote:
>> On Fri, Jan 7, 2011 at 5:15 PM, Tom Terwilliger<terwilliger at lanl.gov>  wrote:
>>> Note that you can get a complete list of
>>> jiffies like this with:
>>>    phenix.list
>> tried a few installations, i get this :
>> TypeError: coercing to Unicode: need string or buffer, NoneType found
> Wow, I wonder how long that's been broken.  Sorry, should be working
> again tomorrow.
> -Nat

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