[phenixbb] AutoBuild Question

[Thomas C. Terwilliger]

Hi Rebecca,

The sequence file should be able to contain any number of separate sequences.

You can tell how many have been read in for actual model-building when
running AutoSol by looking at

  /net/sigma/raid1/scratch1/terwill/misc/junk/wt056/AutoSol_run_1_/TEMP0/build_xxx/initial_build_cycle_1.log
 (xxx=solution number)

which if I put in 3 dummy sequences to seq.dat gives me:

Read            3 chains from file TEMP_seq.dat

CHAIN            1 with            7 residues: starting at residue    1
QLMDMRD

CHAIN            2 with            8 residues: starting at residue    1
APPTTTTA

CHAIN            3 with           10 residues: starting at residue    1
QFRTAAWWWW


All the best,
Tom T


>> Dear phenix community:
>>
>> I ran AutoBuild.dat with a seq.dat file that has 3 separate sequences.
>> Chains A and B were built, but chain C was not, even though there is
>> density
>> for the third chain. It occurred to me that only two of the three chains
>> may
>> have been read in. I seem to recall that seq.dat can be a maximum of two
>> sequences, but am not sure.
>>
>> So, is there a limit to the number of sequences that can be present in
>> seq.dat and if so, what is the limit.
>>
>> Thanks in advance,
>> Rebecca
>> _______________________________________________
>> phenixbb mailing list
>> phenixbb at phenix-online.org
>> http://phenix-online.org/mailman/listinfo/phenixbb
>>