[phenixbb] Elbow and smiles to make CO coordinates

[Yarrow Madrona]

Thanks!  Didn't realize it was so easy.

> For getting carbon monoxide coordinates: In coot, go to File > Get
> Monomer...
> Type in "CMO" and click OK.
>
> A carbon monoxide molecule will po up in the middle of the window
> (provided everything is set up correctly).
>
> If you are trying to fit an electron density, place that density in the
> middle of the window before you retrieve the ligand.
>
> Hope that helps.
>
> Cheers!
> MM
>
> On Jul 8, 2011, at 1:41 PM, Yarrow Madrona wrote:
>
>>
>> Hi,
>>
>> I am trying to use Elbow and smiles to generate carbon monoxide
>> coordinates. I thought it would be easy enough. I made two waters in
>> coot
>> and changed the the oxygens to C and O and set the distance around 1.13
>> angstrom.  Saved these coordinates as a PDB. I then used this in Elbow
>> but
>> it gives me a methyl group.  Not sure what is going on. Any help would
>> be
>> appreciated. Thank you!
>>
>> -Yarrow
>>
>> --
>> Yarrow Madrona
>>
>> Graduate Student
>> Molecular Biology and Biochemistry Dept.
>> University of California, Irvine
>> Natural Sciences I, Rm 2403
>> Irvine, CA 92697
>>
>>
>>
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>
>
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>


-- 
Yarrow Madrona

Graduate Student
Molecular Biology and Biochemistry Dept.
University of California, Irvine
Natural Sciences I, Rm 2403
Irvine, CA 92697