[phenixbb] problem in rosetta rebuilding
Thomas C. Terwilliger
terwilliger at lanl.gov
Tue Jul 19 07:31:32 PDT 2011
I'm not sure about the part about the machine shutting down...but here is
a little test you can run to make sure that rosetta and phenix are working
properly together in rebuilding a model:
or a more complete set of tests:
All the best,
>> On 07/19/2011 04:49 PM, intekhab alam wrote:
>>> i tried to run rosetta on a unix machine (ubuntu 9.04) for my data. Upto
>>> MR step everything goes fine , but during the rebuilding step after 20
>>> cycles the computer shuts down.
>> Interesting behavior for a Linux machine.
>> Once the machine has rebooted, reading the output
>> of the dmesg command and looking at events prior to the last boot
>> may give you some information on why the computer hung.
>> My guess is that you went out of memory while using mr_rosetta.
>>> i have attached the log file for the autobuilding run of rosetta. i am
>>> using phenix 1.7.1-743 version.
>>> i will be grateful if some one helps me out
>>> INTEKHAB ALAM
>>> LABORATORY OF STRUCTURAL BIOINFORMATICS
>>> KOREA UNIVERSITY, SEOUL
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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