[phenixbb] problem in rosetta rebuilding

[Thomas C. Terwilliger]

Hi Intekhab,

I'm not sure about the part about the machine shutting down...but here is
a little test you can run to make sure that rosetta and phenix are working
properly together in rebuilding a model:

  phenix_regression.wizards.test_command_line_rosetta_quick_tests
test_rosetta_rebuild

or a more complete set of tests:

  phenix_regression.wizards.test_command_line_rosetta_quick_tests

All the best,
Tom T



>> On 07/19/2011 04:49 PM, intekhab alam wrote:
>>>
>>> Hi
>>> i tried to run rosetta on a unix machine (ubuntu 9.04) for my data. Upto
>>> MR step everything goes fine , but during the rebuilding step after 20
>>> cycles the computer shuts down.
>>
>> Interesting behavior for a Linux machine.
>>
>> Once the machine has rebooted, reading the output
>> of the dmesg command and looking at events prior to the last boot
>> may give you some information on why the computer hung.
>>
>> My guess is that you went out of memory while using mr_rosetta.
>>
>>> i have attached the log file for the autobuilding run of rosetta. i am
>>> using phenix 1.7.1-743 version.
>>> i will be grateful if some one helps me out
>>> --
>>> INTEKHAB ALAM
>>> LABORATORY OF STRUCTURAL BIOINFORMATICS
>>> KOREA UNIVERSITY, SEOUL
>>>
>>>
>>>
>>> _______________________________________________
>>> phenixbb mailing list
>>> phenixbb at phenix-online.org
>>> http://phenix-online.org/mailman/listinfo/phenixbb
>>
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