[phenixbb] phenix.phaser params.eff labin problem

[Nathaniel Echols]

I think this is a known problem, but I'm not sure how to fix it - I am
downloading the latest CCP4 now to try for myself.  Ralf probably
knows more.  Did you source the setup file in the CCP4 installation?

-Nat

On Wed, Jul 20, 2011 at 11:35 AM, G P <gysubscribe at gmail.com> wrote:
> Hi Nat,
> Thank you so much! That's cool. I just wrote a None to that solution and it
> works!! Now I have some new problems:
> At beginning, I only have phenix installed. I do not have CCP4 installed.
> Then I run "phenix.phaser params.eff" to call phenix run phaser from script
> params.eff. It works well.
> Then, I installed CCP4 with its own phaser inside. Then I run again
> "phenix.phaser params.eff". The computer start to import files (should be
> some libraries and supporting files, not input data) from CCP4 installation
> directory. It seems so strange for me.
> And because some of the .so files in CCP4 directory are for 32bit,
> phenix.phaser gave me error message: wrong ELF class: ELFCLASS32 and refused
> to keep running.
> Is there anyway to set some kind of PATH variables to let phenix.phaser
> params.eff run like without CCP4 installed. (which I did at beginning).
> Sorry for so many questions. Don't worry to reply if you do not have time.
> I fully understand and thanks a lot for your reply.
> regards,
> GP
>
>
> On Wed, Jul 20, 2011 at 8:27 PM, Nathaniel Echols <nechols at lbl.gov> wrote:
>>
>> On Wed, Jul 20, 2011 at 3:46 AM, G P <gysubscribe at gmail.com> wrote:
>> > Now I can make it. I just type labin="FP,SIGFP,DANO,SIGDANO". Then there
>> > is
>> > no error to find the labels. I think because I should give all columns
>> > together.
>>
>> Right, sorry, that's another thing that CCTBX does automatically.
>> This command will show you what array labels Phenix recognizes:
>>
>> iotbx.reflection_file_reader data.mtz
>>
>> > But there is another problem. When I run the script, it shows me:
>> > ...
>> > File
>> > "/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",
>> > line 694, in __init__
>> >     assert os.path.isfile(params.phaser.solution)
>> > AssertionError
>> > File
>> > "/usr/local/phenix-1.7.1-743/phaser/phaser/phenix_interface/driver.py",
>> > line 694, in __init__
>> >     assert os.path.isfile(params.phaser.solution)
>> > AssertionError
>>
>> Look for a parameter called "solution" - this needs to be left as
>> None.  (I don't think there's any way to use this from the command
>> line right now - it's very specific to the GUI.)
>>
>> -Nat
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>
>
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