[phenixbb] phenix.phaser PATH problem

[Francois Berenger]

I have this in my .bashrc, I use the command phenix_setup
only before I start using phenix:

---
# to use locally installed phenix
function phenix_setup() {
     PHENIX_ENV=\
/usr/local/phenix-dev/phenix-dev-756/phenix-dev-756/phenix_env.sh
     if [ -f $PHENIX_ENV ]; then
         source $PHENIX_ENV
     fi
}
---

I use the same kind of trick for CCP4.

PS: You need to adapt this code to where your
     phenix_env.sh is installed.

On 07/21/2011 06:20 PM, G P wrote:
> Hi Ralf,
>
> Thanks a lot for your help. I changed the order and it works now. But I
> am wondering why? Is that means the .bashrc script will read lines from
> down to up which allow it to see the line of source for phenix first?
>
> Thanks a lot again!
>
> cheers,
> GP
>
> On Wed, Jul 20, 2011 at 10:35 PM, Ralf Grosse-Kunstleve
> <rwgrosse-kunstleve at lbl.gov <mailto:rwgrosse-kunstleve at lbl.gov>> wrote:
>
>     Hopefully, all you need to do is source phenix_env last.
>     E.g. look in your .cshrc or .bashrc file with the phenix and ccp4
>     source commands.
>     Reorder the commands so that phenix comes after the ccp4 command.
>     Then open a new shell and run "phenix.phaser params.eff" again.
>     Could you try that?
>     (I recommend against copying files from the phenix to the ccp4 tree.)
>     Ralf
>
>     On Wed, Jul 20, 2011 at 11:21 AM, G P <gysubscribe at gmail.com
>     <mailto:gysubscribe at gmail.com>> wrote:
>
>         Dear all,
>
>         It's long story:
>
>         At beginning, I have phenix installed. I do not have CCP4
>         installed. Then I run "phenix.phaser params.eff" to call phenix
>         run phaser from script params.eff. It works well.
>         Then, I installed CCP4 with its own phaser inside. Then I run
>         again "phenix.phaser params.eff". The computer start to import
>         files (should be some libraries and supporting files, not input
>         data) from CCP4 installation directory. It seems so strange for me.
>
>         And because some of the .so files in CCP4 directory are for
>         32bit, phenix.phaser gave me error message: wrong ELF class:
>         ELFCLASS32 and refused to keep running. I guess I could solve
>         this problem by copying the same .so file in phenix directory
>         into CCP4's directory.
>
>         What I really want to know is why this happen. Is that the
>         installation of CCP4 changed some kinds of PATH variables for
>         phenix? How could I fix by giving a right path again?
>
>         I would appreciate to any help. Thanks a lot guys!
>
>         Best regards,
>         GP
>
>
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