[phenixbb] no density on the anchored proteins

[zhangh1 at umbc.edu]

Hi,

I am using phenix.refine to calculate the map of the 50S RNA (1FFK). It is
weird that there is no density on the anchored proteins even for the Fc
map. Following is the code I am using:

phenix.refine ${f}.pdb ${f}.mtz main.number_of_macro_cycles=0
xray_data.high_resolution=${res} xray_data.r_free_flags.generate=True
export_final_f_model=mtz

Thanks for any advice!

Hailiang