[phenixbb] [Fwd: Re: elbow.join_cif_files error]

[Nigel Moriarty]

Maia

Can you send me the two files privately.

Nigel

On Tue, Jun 14, 2011 at 7:43 AM, Maia Cherney <chern at ualberta.ca> wrote:
> Hi,
>
> I run command line elbow.join_cif_files ligand1.cif ligand2.cif ligand3.cif.
> As I understand, ligand1.cif and ligand2.cif are cif files present in the
> directory, the ligand3.cif should be made after joining the first two cifs.
>
> I get this error
>
> Traceback (most recent call last):
> File
> "/usr/local/phenix-1.7.1-743/elbow/elbow/command_line/join_cif_files.py",
> line 245, in <module>
>  run(filenames, target)
> File
> "/usr/local/phenix-1.7.1-743/elbow/elbow/command_line/join_cif_files.py",
> line 145, in run
>  include_commented_restraints=1, #include_commented_restraints,
> File
> "/usr/local/phenix-1.7.1-743/elbow/elbow/formats/monomer_library_cif_parser.py",
> line 185, in parse_cif
>  raise RuntimeError('long tmp')
> RuntimeError: long tmp
>
>
> Maia
>
>
>
>
>
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-- 
Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty at LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov