[phenixbb] error in the newer version of phenix

[Pavel Afonine]

  Hi Maia,

this should be fixed in the latest nightly build:
http://www.phenix-online.org/download/nightly_builds.cgi

otherwise Nat's suggestion would fix this problem.

Pavel.

On 3/1/11 8:39 AM, Maia Cherney wrote:
> Hi phenixers,
>
> I just installed the version phenix-1.7-650 on ubuntu 9.4 and tried a 
> test run. My previous version runs fine. The new version gives me this 
> error
>
> =============================== refinement start 
> ==============================
>
> Traceback (most recent call last):
>  File 
> "/usr/local/phenix-1.7-650/phenix/phenix/command_line/refine.py", line 
> 11, in <module>
>    command_line.run(command_name="phenix.refine", args=sys.argv[1:])
>  File 
> "/usr/local/phenix-1.7-650/phenix/phenix/refinement/command_line.py", 
> line 89, in run
>    call_back_handler=call_back_handler)
>  File "/usr/local/phenix-1.7-650/phenix/phenix/refinement/driver.py", 
> line 1207, in run
>    call_back_handler       = call_back_handler)
>  File 
> "/usr/local/phenix-1.7-650/phenix/phenix/refinement/strategies.py", 
> line 220, in refinement_machine
>    xray_structure = model.xray_structure,)
>  File 
> "/usr/local/phenix-1.7-650/phenix/phenix/refinement/strategies.py", 
> line 124, in extract_from_pdb_header
>    xray_structure = xray_structure)
>  File "/usr/local/phenix-1.7-650/cctbx_project/mmtbx/f_model.py", line 
> 327, in __init__
>    twin_law_xyz = sgtbx.rt_mx(symbol=self.twin_law, r_den=12, t_den=144)
> RuntimeError: cctbx Error: Parse error: unexpected character:
>  NULL
>  ^
> Please, take a look at the error and advise me how to fix it.
>
> Maia
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