[phenixbb] secondary structure restraints

Bradley Hintze bradley.hintze at duke.edu
Mon Mar 28 06:50:21 PDT 2011


Hello PHENIX developers.

When I run phenix.secondary_structure_restraints 1ZY7.pdb format=refmac I
get this error:
Traceback (most recent call last):
  File
"/Users/bradleyhintze/phenix/phenix-dev-699/cctbx_project/mmtbx/command_line/secondary_structure_restraints.py",
line 6, in <module>
    secondary_structure.run(sys.argv[1:])
  File
"/Users/bradleyhintze/phenix/phenix-dev-699/cctbx_project/mmtbx/secondary_structure/__init__.py",
line 766, in run
    if (len(proxies) == 0) :
NameError: global name 'proxies' is not defined

Am I missing something?

Also, is there anything like '-h' on phenix.secondary_structure_restraints
so that I can figure out the different options?

Thanks,
Bradley
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