[phenixbb] mr_rosetta

[Jermaine Jenkins]

I ran the tests as requested and got an  "ALL COMMAND_LINE TESTS OK" so
things appear to be working fine. I am submitting my job to a cluster using
a script that qsubs nodes=1:ppn=4,walltime=160:00:00. Then executes another
script that sources phenix,  sets an export phenix_rosetta path an runs
"phenix.mr_rosetta mr_rosetta_params.eff ".


JJ

On Tue, May 10, 2011 at 9:56 PM, Thomas C. Terwilliger <terwilliger at lanl.gov
> wrote:

> Hi Jermaine,
> I am sorry for the trouble!  I am wondering if rosetta is working quite
> right? Can you possibly run the regression tests on mr_rosetta:
>
> phenix_regression.wizards.test_command_line_rosetta_quick_tests
>
> and see if that helps diagnose the problem?
> All the best,
> Tom T
>
> >> I have been trying a standard run of mr_rosetta and I have stopped at
> the
> >> same point (output below). 32 folders were created in the
> >> GROUP_OF_RESCORE_MR_ROSETTA_1 folder and the mr_rosetta.log files all
> say
> >> that saved overall results to a  .../results.pkl and the Run log file
> >> states
> >> that each job finished. But no further files were written in the Work
> >> folder
> >> under each RUN folder and I am assuming there should be a folder with my
> >> final 20 Rosetta models somewhere. Does this mean there was a failure in
> a
> >> subscript?
> >>
> ==============================================================================
> >>
> >> Starting sub-processes Group of rescore MR rosetta:Rescoring set of
> >> rosetta
> >> models...
> >>
> ==============================================================================
> >>
> >> Splitting work into 32 jobs and running with 4 processors using sh
> >> background=True in ....MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1
> >>
> >> Starting job 1...Log will be:
> >> ..../MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1/RUN_FILE_1.log
> >> Starting job 2...Log will be:
> >> ..../MR_ROSETTA_1/GROUP_OF_RESCORE_MR_ROSETTA_1/RUN_FILE_2.log
> >>
> >> thanks,
> >> JJ
> >> _______________________________________________
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> >> phenixbb at phenix-online.org
> >> http://phenix-online.org/mailman/listinfo/phenixbb
> >>
>
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