[phenixbb] mr_rosetta test failure
Thomas C. Terwilliger
terwilliger at lanl.gov
Tue May 31 13:39:47 PDT 2011
I'm sorry for the problem! This is a little difficult to debug because
the problem has to do with Rosetta and Phenix, not just Phenix.
What happens with this (if you are not using a mac, change the last part
of this command to match what is in your rosetta_source/bin/ directory):
This is the command to run Rosetta by itself. If this doesn't work, then
there is some kind of problem in the installation. Let me know and I will
put you in touch with someone from the Rosetta team to help debug it.
All the best,
>> We installed latest phenix and latest rosetta last week. I ran test
>> phenix_regression.wizards.test_command_line_rosetta_quick_tests and got
>> test failing at the prerefine because of missing shared libraries, as
>> below in the FAQ (italics).
>> I tried again in both bash & csh after setting or exporting the
>> variables shown below, but got the same exact error. If I do printenv the
>> shell sees the new env var.
>> What should I try next?
>> THanks so much
>> Laurie Betts & CD Poon
>> University of North Carolina
>> *Why does mr_rosetta bomb and say "error while loading shared libraries:
>> libdevel.so: cannot open shared object file: No such file or directory ?
>> This may indicate that somewhere your system is defining the shared
>> libraries that Rosetta needs, and these are for a place that is not where
>> Rosetta expects them to be. You can try to ignore the previous definitions
>> this way: If you are using the bash or sh shells:
>> export PHENIX_TRUST_OTHER_ENV=1
>> or csh (C-shell):
>> setenv PHENIX_TRUST_OTHER_ENV 1
>> in the script where you run mr_rosetta, or before you run it from the
>> command line.
>> phenixbb mailing list
>> phenixbb at phenix-online.org
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