[phenixbb] Why my phenix refine do not stop at the final round of refine

Pavel Afonine pafonine at lbl.gov
Wed Nov 23 07:15:45 PST 2011

Hi Dialing,

is there a particular reason why you wanted run more macro-cycles (100) 
than the default (3)?

Try running phenix.refine with "--show-process-info" and see if its 
memory requirements match what you have on your computer. Do it with a 
fewer number of macro-cycles, like 1 or even zero.

Make sure you are using the latest version of PHENIX, since I guess the 
problem is related to the memory intake, and it was improved recently.


> Dear All,
> I have run 100 rounds of Phenix refine, and it took long time to reach 
> round 100. But at round 100it has been for several hours without 
> indication to complete, although the working light is still flashing.
> I am looking forward to getting your reply on how to solve this problem.
> Best regards.
> Dialing

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