[phenixbb] mr_rosetta

Abhinav Kumar abhinavk at slac.stanford.edu
Tue Oct 11 12:50:12 PDT 2011


Somebody helped me out with the format. Thanks.
My alignment file looks like:
## SP 3n91


0  --DDDEVTMNSK....
0  GSDNEFPDFDYQ....



But phenix says

******************* ERROR ENDING ***************

Sorry, the alignment file ['xx.ali']
does not seem to have the correct format?
It can either start with '##' or with '> title of target seq here'

******************* ERROR ENDING ***************

I do have the file starting with '##'!

Thanks,
Abhinav

JCSG at SSRL, SLAC
Phone: (650) 926-2992
Fax: (650) 926-3292


On 10/11/2011 12:23 PM, Abhinav Kumar wrote:
> Hi,
>
> I am looking for file format for alignment file (*.ali) used in 
> mr_rosetta.
> The description on the Phenix web site is not clear.
> Can someone please describe  the file format with an example?
> -- 
>
> Thanks,
> Abhinav
>
> JCSG at SSRL, SLAC
> Phone: (650) 926-2992
> Fax: (650) 926-3292
>
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