[phenixbb] COOT not "connected" to PHENIX

[Nathaniel Echols]

On Tue, Oct 25, 2011 at 7:14 AM, Yuri <yuri.pompeu at ufl.edu> wrote:
> I am running 1.7.2-869 and coot 0.6.2
> By telling phenix where hte path is, I can get it to launch from any phenix
> job tab.
> However in one of my machines, even though COOT launches through phenix it
> is not connected to it
> which does not allow me to look at clashes when building in coot- a very
> useful feature may I add!!!
> In one of my RHEL5 machines it is working nicely, and I dont see any obvious
> differences between the working and the non-working one.

What is the output of "coot --version"?  Also, when you click one of
the buttons in PHENIX to launch Coot for the first time, it should
print out several pages of log on the terminal (as usual).  Could you
please send me this text?

-Nat