[phenixbb] autosol error

Nora Cronin Nora.Cronin at icr.ac.uk
Tue Aug 21 14:18:15 PDT 2012


Running phenix.autosol in input wavelength and f" and f' parameters are rejected as follows:

"Guessing wavelength for  mad is 1.0
Guessing scattering factors for  PT  at  1.0  A

Removing wavelength_list from Facts as length does not match
wavelength_list: [1.0721, 1.0538]
input_file_list:  ['/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_FP_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_F(+)_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_FP_rm.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_F(+)_rm.sca']

NOTE: you may need to select specific datasets from your
input files
with either group_labels_list (for a script)
 or peak.labels=xxxx (or similar, for command_line)


Removing f_prime_list from Facts as length does not match
f_prime_list: [-17.31, -15.31]
input_file_list:  ['/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_FP_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_F(+)_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_FP_rm.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_F(+)_rm.sca']

NOTE: you may need to select specific datasets from your
input files
with either group_labels_list (for a script)
 or peak.labels=xxxx (or similar, for command_line)


Removing f_double_prime_list from Facts as length does not match
f_double_prime_list: [11.93, 10.5]
input_file_list:  ['/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_FP_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_pk_editdname1_PHX_F(+)_pk.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_FP_rm.sca', '/dls/i03/data/2012/mx6385-40/processing/vvx/phenix/AutoSol_run_6_/xds_262_6_rm_editdname1_PHX_F(+)_rm.sca']

NOTE: you may need to select specific datasets from your
input files
with either group_labels_list (for a script)
 or peak.labels=xxxx (or similar, for command_line)


Why is this rejection of input happening?  what does "length does not match" indicate?


Best

Nora



The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.

This e-mail message is confidential and for use by the addressee only.  If the message is received by anyone other than the addressee, please return the message to the sender by replying to it and then delete the message from your computer and network.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20120821/1f60adeb/attachment-0001.htm>


More information about the phenixbb mailing list