[phenixbb] CCI-Apps - Cygwin incompatibility after upgrade

Ralf Grosse-Kunstleve rwgrosse-kunstleve at lbl.gov
Wed Jan 4 20:10:06 PST 2012


Hi Carsten,

Could you try this?

http://cygwin.com/ml/cygwin/2001-01/msg00724.html

Ralf

On Wed, Jan 4, 2012 at 6:28 PM, Schubert, Carsten [JRDUS] <
CSCHUBER at its.jnj.com> wrote:

> **
>
> Hi,
>
> After upgrading my cci_apps install on Windows from 1.7-718 to 1.7.3-928the interoperability with cygwin is
> gone. Calling phenix.refine just gives a ‘Command not found’ error. Turns
> out that the little .exe files for each subprogram were replaced by .bat
> files. That is fine if one just wants to use the DOS CLI, but cygwin is
> not able to call programs via .bat files as far as I know.
>
> Is there a workaround for this problem besides working in the DOS CLI
> (yuk)?
>
> Thanks
>
> Carsten
>
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>
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