[phenixbb] ask refinement question including an aligo as the ligand

crystallogrphy qunwan1 at gmail.com
Wed Jul 4 12:28:09 PDT 2012


I want to refine my structure including a sugar oligomer as the ligand in
Phenix GUI.

I first put each subunit into the density and merge them together as the
oligomer in Coot. Then I merged the oligomer coordinates to the protein
file. Then I run phenix.elbow to get the cif file. Finally, I run
phenix.refine. However, the oligomer units were pushed away from each
other. I guess I need to modify the cif file to link the oligo units
together. Does anyone know how I can I do it?

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/phenixbb/attachments/20120704/dc88aeb8/attachment.htm>

More information about the phenixbb mailing list