[phenixbb] problem on phenix refine

Pavel Afonine pafonine at lbl.gov
Fri Jul 20 05:52:34 PDT 2012

Hi ??,

hm, this shouldn't normally happen! Could you please send me relevant 
inputs so I can reproduce the problem and see what exactly is happening? 
Also explain how you run autobuild and then phenix.refine.


On 7/20/12 5:43 AM, ?? wrote:
> Hi all:
> I do not know if someone mentioned this problem here before. Recently 
> I ran the AutoBuild to build the structure model, and it outputs a 
> best model(R/Rfree 0.20/0.24). After that, I tried the program Phenix 
> Refine using the .pdb and .mtz generated by AutoBuild. The R value 
> increased to 0.23/0.30 by the end of this refine.
> I wonder why this happened? Or if I have done something wrong?

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