[phenixbb] Error in phenix.autobuild

[Tanner, John J.]

Seeing "IOTBX_ASSERT(strlen(label)" in the error message with fresh eyes
this afternoon prompted me to shortened the data labels to F and SIGF.  Now
it works.  Go figure...






> From: Chemistry Department <TannerJJ at missouri.edu>
> Reply-To: PHENIX user mailing list <phenixbb at phenix-online.org>
> Date: Wed, 27 Jun 2012 16:25:13 +0000
> To: PHENIX user mailing list <phenixbb at phenix-online.org>
> Subject: [phenixbb] Error in phenix.autobuild
> 
> Can anyone shed light on the error below?  The situation is that I have a ~90%
> complete model from refinement (r_work = 0.2415, r_free = 0.3167), and I want
> phenix.autobuild to build the rest of the structure.
> 
> I issued this command:
> 
> phenix.autobuild data=../ccp4/DrPRODH3-6_1_scala2.6Ang.mtz
> model=Refine_9/DrPRODH_refine_9.pdb seq_file=../seq/DrPRODH-noMet1.fasta
> rebuild_in_place=False nproc=3
> 
> I got this error:
> 
> [tannerjj at europa AutoBuild_run_2_]$ tail -n20 AutoBuild_run_2_1.log
> 
> Output space group: P 1 21 1 (No. 4)
> Columns of data in AutoBuild_run_2_/refinement_PHX.mtz:
> H K L FreeR_flag F_DrPRODH3-6 SIGF_DrPRODH3-6
> Unit cell: (46.806, 95.875, 70.504, 90, 107.733, 90)
> Space group: P 1 21 1 (No. 4)
> Using AutoBuild_run_2_/refinement_PHX.mtz for refinement
> 
> Correcting data file /titan/tanner/DrPRODH/ccp4/DrPRODH3-6_1_scala2.6Ang.mtz
> for anisotropy and writing to AutoBuild_run_2_/aniso_data_PHX.mtz
> 
> 
> Getting overall aniso B from datafile...
> 
> *************ERROR ENDING *******************
> 
> ****************************************
> AutoBuild Input failed
> iotbx InternalError:
> /net/longnose/scratch2/phenix/phenix-1.7.3-928/cctbx_project/iotbx/mtz/dataset
> .cpp(97): IOTBX_ASSERT(strlen(label) < sizeof(column_ptr->label)) failure.
> ****************************************
> *************ERROR ENDING *******************
> 
> 
> 
> 
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