[phenixbb] Rosetta and disulphides
mortengroftehauge.work at gmail.com
Thu Mar 22 04:39:14 PDT 2012
Well they aren't conserved so I guess I'll have to do some manual
remodelling. The new version of HHPred is nice about building you a quick
homology model to start with though (using Modeller).
On 22 March 2012 00:56, Terwilliger, Thomas C <terwilliger at lanl.gov> wrote:
> Hi Morten,
> I asked about this...and if your input model has Cys-Cys disulfides and
> the sequence file also has these cysteine residues, then the disulfides
> should be maintained by Rosetta. If that isn't happening, let me know!
> I hope that helps!
> All the best,
> Tom T
> *From:* phenixbb-bounces at phenix-online.org [
> phenixbb-bounces at phenix-online.org] on behalf of Morten Groftehauge [
> mortengroftehauge.work at gmail.com]
> *Sent:* Wednesday, March 21, 2012 8:25 AM
> *To:* PHENIX user mailing list
> *Subject:* [phenixbb] Rosetta and disulphides
> Hi phenix-bb'ers,
> Is there anyway to make phenix.mr_rosetta take disulphide bridges into
> account? It's a rather enormous restraint on conformational space after all
> (wait is that a constraint or restraint? I get confused).
> Morten K Grøftehauge, PhD
> Pohl Group
> Durham University
> phenixbb mailing list
> phenixbb at phenix-online.org
Morten K Grøftehauge, PhD
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