[phenixbb] Hi Res Model. Maybe its time to Include Hydrogens?
Pavel Afonine
pafonine at lbl.gov
Thu Mar 1 16:33:46 PST 2012
Hi Yuri,
try:
hydrogens.refine=individual
and let me know if that improves the maps.
I found a bug such that if hydrogens.refine=riding then H atom
scattering contribution is not included into map (but included
everywhere else).
I will fix this bug within a week or so.
Pavel
On 3/1/12 2:52 PM, Yuri wrote:
> Dear users,
> I am refining a 400 aa protein with data out to 1.16 A (real data). I
> am almost finished with refinement. I have good geometry, complete
> model and ligands Rw 0.11 Rf 0.13.
> Difference maps seem to be asking for more. See attached screen
> shot.Both maps 2Fo-Fc (non-filled) and Fo-Fc are contoured at 3 sigma.
> How should I handle this? I have used hydrogens all along (riding).
> Thanks for your time
>
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