[phenixbb] generate_cif_for_NT_MPD

Kelly Daughtry kddaught at bu.edu
Mon Mar 5 11:52:45 PST 2012


Maybe I'm missing something here, but don't you just import both cif files
(for nucleic acid, and MPD individually) into phenix.refine? Did you try
that?
Kelly Daughtry


*******************************************************
Kelly Daughtry, Ph.D.
Post-Doctoral Fellow, Raetz Lab
Biochemistry Department
Duke University
Alex H. Sands, Jr. Building
303 Research Drive
RM 250
Durham, NC 27710
P: 919-684-5178
*******************************************************


On Mon, Mar 5, 2012 at 12:29 PM, Xue-Yuan Pei <xyp20 at mole.bio.cam.ac.uk>wrote:

> Dear All:
> I am using phenix-1.7.2 to refine my structure. Now i am facing a problem
> with .cif file. I could not generate  cif files for a modified nucleic acid
> and MPD at same time with phenix.elbow or phenix.ready_set. If I use
> phenix.elbow to generate cif file for modefied nucleic acid only, phenix
> .refine complains about MPD cif not found, same for MPD. If I combine two
> cif files together, phenix.refine also complains. Is there better to
> generate cif file containing both modified nucleic acid and MPD?
> Many thanks for your help,
> Xue
>
>
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