[phenixbb] advice for speeding up cif_as_mtz
ericwilliams at pobox.com
Mon Sep 10 07:38:35 PDT 2012
I'm currently running cif_as_mtz and model_vs_data on the whole PDB as part
of my dissertation. Time has become a critical concern, and cif_as_mtz
(dev-1141) is running very, very slowly (1-4 minutes per entry).
Here's how I'm calling it:
phenix.cif_as_mtz <sf_cif_fn> --ignore-bad-sigmas --merge
--remove-systematic-absences --map-to-asu --symmetry=<pdb_model_fn>
I'm hoping that perhaps someone could help me determine which command line
argument(s) could be removed to provide maximum speed-up.
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