[phenixbb] advice for speeding up cif_as_mtz
pjeffrey at princeton.edu
Mon Sep 10 12:04:22 PDT 2012
I would take a look at cif2mtz in the CCP4 package.
On 9/10/12 10:38 AM, Eric Williams wrote:
> I'm currently running cif_as_mtz and model_vs_data on the whole PDB as
> part of my dissertation. Time has become a critical concern, and
> cif_as_mtz (dev-1141) is running very, very slowly (1-4 minutes per entry).
> Here's how I'm calling it:
> phenix.cif_as_mtz <sf_cif_fn> --ignore-bad-sigmas --merge
> --remove-systematic-absences --map-to-asu --symmetry=<pdb_model_fn>
> I'm hoping that perhaps someone could help me determine which command
> line argument(s) could be removed to provide maximum speed-up.
> Thanks. :)
> phenixbb mailing list
> phenixbb at phenix-online.org
More information about the phenixbb