[phenixbb] Molecular replacement pipeline MRage

Morten Grøftehauge mortengroftehauge.work at gmail.com
Mon Aug 5 02:29:38 PDT 2013

Hi guys,

So I've been trying out MRage. I used the GUI since I didn't care too much
and just wanted it started.
I noticed two things. It doesn't show you the best results so far. It
doesn't even save the best results so far. Everything is hidden in a giant
log file in the .phenix/project_data folder (.phenix is hidden so I'm
guessing that means you don't want people snooping around in there?).
I can grep the TFZ= lines with grep 'TFZ=' mr_pipeline.log >
grep-TFZ.txtand sort them with sort
-r -k 13 grep-TFZ.txt but I think this is a bit excessive for the average
Oh, and now I tried to re-run the highest scoring model in Phaser and it
crashed and took MRage with it. Are you sure MRage is out of beta? Trying
to be facetious, not mean.


Morten K Grøftehauge, PhD
Pohl Group
Durham University
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