[phenixbb] coot and mtz interpretation

Nathaniel Echols nechols at lbl.gov
Wed Aug 28 07:57:19 PDT 2013

On Wed, Aug 28, 2013 at 7:51 AM, Heather L Condurso <condurso at bc.edu> wrote:

> I'm having an issue that when I launch coot from the phenix refine gui it
> loads the pdb and mtz fine, but the FoFc map colors are green and royal
> blue.  When I open coot first and then load the pdb and mtz files, the FoFc
> map colors are green and red, but the blobs that were green in the phenix
> loaded maps are now red and what was royal blue is now green.  Has anyone
> else had this issue?  I am running a mac with OS X 10.6.8 and coot 0.6.1
> and phenix 1.8.2-1309.  I have an identical mac running all the same
> versions and everything loads green and red as expected. Is there a
> parameter file somewhere that tells coot how to display the phenix maps
> that may provide a clue as to what is going on?

See Preferences->Colors.  If that doesn't seem consistent with what you see
in Coot, we may have a bug...

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