[phenixbb] coot and mtz interpretation

Heather L Condurso condurso at bc.edu
Wed Aug 28 08:22:50 PDT 2013

I can go into map colors and change them to whatever color I want, but if I
try and make what I imagine should be + green, then - are royal blue.  The
only way I can get red and green is if the - are green, then the positives
are red.  I will just pretend royal blue is red for now.  If you come up
with anything let me know.

On Wed, Aug 28, 2013 at 10:57 AM, Nathaniel Echols <nechols at lbl.gov> wrote:

> On Wed, Aug 28, 2013 at 7:51 AM, Heather L Condurso <condurso at bc.edu>wrote:
>> I'm having an issue that when I launch coot from the phenix refine gui it
>> loads the pdb and mtz fine, but the FoFc map colors are green and royal
>> blue.  When I open coot first and then load the pdb and mtz files, the FoFc
>> map colors are green and red, but the blobs that were green in the phenix
>> loaded maps are now red and what was royal blue is now green.  Has anyone
>> else had this issue?  I am running a mac with OS X 10.6.8 and coot 0.6.1
>> and phenix 1.8.2-1309.  I have an identical mac running all the same
>> versions and everything loads green and red as expected. Is there a
>> parameter file somewhere that tells coot how to display the phenix maps
>> that may provide a clue as to what is going on?
> See Preferences->Colors.  If that doesn't seem consistent with what you
> see in Coot, we may have a bug...
> -Nat
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