[phenixbb] Coot not allowing real space refinement when connected to phenix
Zheng Zhou
zhengzhouzz at gmail.com
Wed Dec 4 21:04:14 PST 2013
Hi, Jobi,
I think you may need to change the coot path for Phenix.
It can be done easily through the GUI, File, preferences, Coot Path:
Best,
Zheng
On Thu, Dec 5, 2013 at 3:36 AM, Nathaniel Echols <nechols at lbl.gov> wrote:
> On Tue, Dec 3, 2013 at 10:54 PM, Jobichen Chacko <jobichenc at gmail.com>wrote:
>
>> I recently upgraded to latest version of coot (version0.7.2). When I
>> try to do the Real space refine zone option, coot is giving the
>> following complaint (Refinement setup failure. Failed to find
>> restraints for PROLYSILE).
>>
>> But it works fine when I open coot separately from a terminal and read
>> the pdb and mtz file.
>>
>
> Phenix will instruct Coot to load user-provided CIF files, but I didn't
> think we interfere with Coot's own restraints otherwise. Can you please
> send me the console output of Coot a) when launched from Phenix b) when
> launched by itself?
>
> -Nat
>
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