[phenixbb] phenix.find_ncs_from_density density_search.dump_ncs_density doesn't output mtz

[Terwilliger, Thomas C]

Hi Francis,
Oh hmmm, I'm sorry! You are right. You need a nightly build for that option, as I put it in since the last official release.
All the best,
Tom T

On Dec 11, 2013, at 11:03 AM, Francis Reyes wrote:

> Hi Tom
> 
> 
> Phenix 1.8.4-1496 doesn't have this option for phenix.find_ncs_from_density ? 
> 
> Thnx, 
> $ phenix.find_ncs_from_density  find_ncs_from_density_params.eff ncs_mask_file=foo.mtz
> Parameters taken from: find_ncs_from_density_params.eff
> Sorry: 
> Sorry, cannot interpret the keyword: ncs_mask_file=foo.mtz
> 
> 
> 
> F
> 
> On Dec 11, 2013, at 8:33 AM, Terwilliger, Thomas C <terwilliger at lanl.gov> wrote:
> 
>> Hi Francis,
>> 
>> Try this:
>> 
>> phenix.find_ncs_from_density map_coeffs.mtz ncs_mask_file=ncs_mask.mtz
>> 
>> and look for ncs_mask.mtz
>> 
>> (dump_ncs_density instead dumps average density to temp_dir/ncs_avg_map_coeffs.mtz)
>> 
>> All the best,
>> Tom T
>> 
>> 
>> On Dec 10, 2013, at 11:50 PM, Francis Reyes wrote:
>> 
>>> I'd like to see the region of my maps that obey the NCS operators and I was hoping for separate mtz's for each region given I had set density_search.dump_ncs_density = True. However, I'm not getting any output mtzs. Any ideas?
>>> 
>>> Thanks,
>>> F
>>> 
>>> 
>>> 
>>> ---------------------------------------------
>>> Francis E. Reyes PhD
>>> 215 UCB
>>> University of Colorado at Boulder
>>> 
>>> 
>>> 
>>> 
>>> 
>>> 
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