[phenixbb] phenix.find_ncs_from_density density_search.dump_ncs_density doesn't output mtz

[Francis Reyes]

Thanks Tom, 

Does phenix.find_ncs_from_density cope with multi-domain NCS? 

F

On Dec 11, 2013, at 11:39 AM, Terwilliger, Thomas C <terwilliger at lanl.gov> wrote:

> Hi Francis,
> Oh hmmm, I'm sorry! You are right. You need a nightly build for that option, as I put it in since the last official release.
> All the best,
> Tom T
> 
> On Dec 11, 2013, at 11:03 AM, Francis Reyes wrote:
> 
>> Hi Tom
>> 
>> 
>> Phenix 1.8.4-1496 doesn't have this option for phenix.find_ncs_from_density ? 
>> 
>> Thnx, 
>> $ phenix.find_ncs_from_density  find_ncs_from_density_params.eff ncs_mask_file=foo.mtz
>> Parameters taken from: find_ncs_from_density_params.eff
>> Sorry: 
>> Sorry, cannot interpret the keyword: ncs_mask_file=foo.mtz
>> 
>> 
>> 
>> F
>> 
>> On Dec 11, 2013, at 8:33 AM, Terwilliger, Thomas C <terwilliger at lanl.gov> wrote:
>> 
>>> Hi Francis,
>>> 
>>> Try this:
>>> 
>>> phenix.find_ncs_from_density map_coeffs.mtz ncs_mask_file=ncs_mask.mtz
>>> 
>>> and look for ncs_mask.mtz
>>> 
>>> (dump_ncs_density instead dumps average density to temp_dir/ncs_avg_map_coeffs.mtz)
>>> 
>>> All the best,
>>> Tom T
>>> 
>>> 
>>> On Dec 10, 2013, at 11:50 PM, Francis Reyes wrote:
>>> 
>>>> I'd like to see the region of my maps that obey the NCS operators and I was hoping for separate mtz's for each region given I had set density_search.dump_ncs_density = True. However, I'm not getting any output mtzs. Any ideas?
>>>> 
>>>> Thanks,
>>>> F
>>>> 
>>>> 
>>>> 
>>>> ---------------------------------------------
>>>> Francis E. Reyes PhD
>>>> 215 UCB
>>>> University of Colorado at Boulder
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
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---------------------------------------------
Francis E. Reyes PhD
215 UCB
University of Colorado at Boulder