[phenixbb] phenix.refine command line

[Simon Kolstoe]

yes!

On 29 Jan 2013, at 14:55, R.D. Oeffner wrote:

> Hi Simon,
> 
> Just to be clear; did you actually exectute the alias command before attempting to run phenix.refine?
> 
> rob
> 
> 
> On Jan 29 2013, Simon Kolstoe wrote:
> 
>> Hi guys,
>> 
>> I'm just trying to install phenix on a students new macbook pro running OS10.8.2, and want to get phenix.refine working on the command line. I've put in:
>> 
>> alias setphenix="source /Applications/PHENIX-1.8.1-1168/Contents/phenix-1.8.1-1168/phenix_env.sh"
>> 
>> in the .bashrc which seems to execute OK (and already pointed the .bash_profile to .bashrc) however whenever I then type phenix.refine I get command not found. As this is the same setup that I have running on my own machine I am a bit confused as to what is happening!
>> 
>> Thanks!
>> 
>> Simon
>> 
>> 
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>> 
> 
> -- 
> Robert Oeffner, Ph.D.
> Research Associate, The Read Group
> Department of Haematology, University of Cambridge
> Cambridge Institute of Medical Research
> Wellcome Trust / MRC Building, Hills Road, Cambridge, CB2 0XY
> www-structmed.cimr.cam.ac.uk, tel:01223763234, mobile:07712 887162
> 
> 
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