[phenixbb] proteins sequence for phenix

[Terwilliger, Thomas C]

Hi Lisa,

Right now either way you give it to phenix.autosol it will be interpreted as (A,B) with ncs_copies of (A,B), and ncs_copies specified separately by you or guessed by the software.  I think I will change it however so that if you put in n copies of sequence A and m copies of sequence B, it will think it is (nA,mB) and calculate solvent content accordingly.

All the best,
Tom T

________________________________
From: phenixbb-bounces at phenix-online.org [phenixbb-bounces at phenix-online.org] on behalf of LISA [sciencecry at gmail.com]
Sent: Friday, July 26, 2013 12:55 AM
To: phenixbb at phenix-online.org
Subject: [phenixbb] proteins sequence for phenix

Dear All,

Phenix will ask for the protein sequence when we create a new project.  I try to solve my complex by the Autosol in phenix with proteins sequence. My complex contains 2 molecule A and 3 molecule B. How can I give the sequence in phenix? will it should be:
>A
..................................................................................................................
>B
..............................................................................................................................

or


>A
..................................................................................................................
 >A
..................................................................................................................
>B
..............................................................................................................................
>B
..............................................................................................................................

>B
..............................................................................................................................

Thank you.

Lisa
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