[phenixbb] Grid size in max_entropy maps

Paul Emsley pemsley at mrc-lmb.cam.ac.uk
Mon May 20 02:58:04 PDT 2013


Something else that _might_ be useful is to resample the MEM.  In Coot 
you can do so with this "trick": use a combination of a 
standardly-sampled map (with 0 weight) and your MEM (with 1 weight) to 
make an "average" map (Coot uses the first map in the set of maps for 
the sampling of the resulting "average" map).

Paul.

On 17/05/13 19:28, Schubert, Carsten [JRDUS] wrote:
> Thanks Paul, I'll give that a shot.
>
> -----Original Message-----
> From: phenixbb-bounces at phenix-online.org [mailto:phenixbb-bounces at phenix-online.org] On Behalf Of Paul Emsley
> Sent: Friday, May 17, 2013 12:21 PM
> To: phenixbb at phenix-online.org
> Subject: Re: [phenixbb] Grid size in max_entropy maps
>
> On 05/17/2013 04:34 PM, Schubert, Carsten [JRDUS] wrote:
>> Thanks for the background info and implementing the utility. Looks like the map option would be best way to go.  These big maps just represent a usability problem; on a large unit cell coot slows down considerably even on a powerful workstation.
> This might help:
>
> Edit -> Map Parameters... -> Dynamic Map Sampling [tick]
>
> (set-dynamic-map-zoom-offset 50) ;; or some value...
>
> Then recontour (e.g. midlle-mouse scroll or recentre)
>
> Paul.
>
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