[phenixbb] warning: do not upgrade Mac OS yet!

[Engin Özkan]

But, no, that problem existed before the Mavericks update (with Snow 
Leopard and Mountain Lion). I had learned to live with it.

Engin

On 10/25/13 1:45 PM, Petri Kursula wrote:
> What I saw were problems with phenix.refine (well-did not try anything 
> else yet). The job seems to start normally (no error messages), but 
> when you check the log file, nothing is happening (it remains empty or 
> stops at initial steps). If you abort, close Phenix and restart it, 
> the exactly same job runs just fine. I'm starting Phenix GUI from 
> 'Applications', not command line.
>
> Petri
>
> ---
> Petri Kursula, PhD
> project leader, adjunct professor
> Department of Biochemistry & Biocenter Oulu, University of Oulu, Finland
> Department of Chemistry, University of Hamburg/DESY, Germany
> www.biochem.oulu.fi/kursula <http://www.biochem.oulu.fi/kursula>
> www.desy.de/~petri/research <http://www.desy.de/%7Epetri/research>
> petri.kursula at oulu.fi <mailto:petri.kursula at oulu.fi>
> ---
>
> On 25 Oct 2013, at 17:01, Nathaniel Echols <nechols at lbl.gov 
> <mailto:nechols at lbl.gov>> wrote:
>
>> Only the GUI, as far as I know - although apparently there are 
>> problems with the version of Python we're currently distributing, but 
>> I don't think those will affect most people.
>>
>> -Nat
>>
>>
>> On Fri, Oct 25, 2013 at 7:37 AM, Bosch, Juergen <jubosch at jhsph.edu 
>> <mailto:jubosch at jhsph.edu>> wrote:
>>
>>     is this warning only for the GUI or also the CLI ?
>>     Thanks,
>>
>>     Jürgen
>>
>>     On Oct 25, 2013, at 10:22 AM, Nathaniel Echols wrote:
>>
>>>     There is some kind of strange issue with wxPython on the new Mac
>>>     OS ("Mavericks"), which for at least the 1.8.4 version prevents
>>>     Phenix application windows (but not the main GUI) from opening.
>>>      It is also printing out an extraordinary number of warning
>>>     messages about fonts to the console.  I'm hoping there is a
>>>     simple solution (which seems likely, since 1.8.2 is mostly okay
>>>     despite using the same version of wxPython), but until we figure
>>>     out what is causing this, I recommend leaving your Macs
>>>     unmolested if you want to use the Phenix GUI.
>>>
>>>     Updates to follow if-and-when I fix this.
>>>
>>>     thanks,
>>>     Nat
>>>     _______________________________________________
>>>     phenixbb mailing list
>>>     phenixbb at phenix-online.org <mailto:phenixbb at phenix-online.org>
>>>     http://phenix-online.org/mailman/listinfo/phenixbb
>>
>>     ......................
>>     Jürgen Bosch
>>     Johns Hopkins University
>>     Bloomberg School of Public Health
>>     Department of Biochemistry & Molecular Biology
>>     Johns Hopkins Malaria Research Institute
>>     615 North Wolfe Street, W8708
>>     Baltimore, MD 21205
>>     Office: +1-410-614-4742 <tel:%2B1-410-614-4742>
>>     Lab: +1-410-614-4894 <tel:%2B1-410-614-4894>
>>     Fax: +1-410-955-2926 <tel:%2B1-410-955-2926>
>>     http://lupo.jhsph.edu <http://lupo.jhsph.edu/>
>>
>>
>>
>>
>>
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